- June 2010 – Present
-
Programmer S. pombe genome database
(PomBase)
Department of Biochemistry, University of Cambridge
- Tasks
-
full stack development
-
bioinformatics support
-
system administration
- Major projects
-
Canto - a community
curation tool
-
PomBase v2
-
JaponicusDB
- Secondments
-
FlyBase - 3 months customising Canto for Drosophila
phenotypes
-
PHI-base - 6 months adapting Canto for pathogen-host interaction
phenotype curation
- Sept 2012 – Dec
2016
-
Scientific Officer (part time) Gemmell
Group
Department of Anatomy, University of Otago
- Tasks
-
bioinformatics support
-
genome and transcriptome assembly and analysis
-
bioinformatics mentoring and training
-
tuatara genome
project
- Feb 2009 – June
2010
-
Computer Associate Baulcombe Group
Department of Plant Sciences, University of Cambridge
- Tasks
-
bioinformatics support
-
creation of a short read analysis pipeline
- Sept 2007 – Feb
2009
-
Programmer modENCODE Data Coordination
Center
Cambridge Systems Biology Centre
- Tasks
-
helped create the data warehouse for the modENCODE project:
modMine
- Feb 2004 – Sept
2007
-
Programmer FlyMine/InterMine group
Department of Genetics, University of Cambridge
- Tasks
-
Java programming for the InterMine
project
- Oct 2001 – Feb
2004
-
Principal Computer Programmer Pathogen
Sequencing Unit
The Sanger Institute
- Tasks
-
programming and bioinformatics support
- Major projects
-
Artemis -
a genome analysis and annotation tool
-
ACT
- a genome comparison viewer
- Apr 1999 – Oct
2001
-
Senior Computer Programmer Pathogen Sequencing
Unit
The Sanger Institute
- Sept 1998 – Apr
1999
-
Computer Programmer Pathogen Sequencing
Unit
The Sanger Institute