- June 2010 – Present
Programmer S. pombe genome database (PomBase)
Department of Biochemistry, University of Cambridge
- Tasks
- web and database programming
- system administration
- Major projects
- Canto - a community curation tool
- PomBase v2
- JaponicusDB
- Secondments
- FlyBase - 3 months customising Canto for drosophila phenotypes
- PHI-base - 6 months adapting Canto for pathogen-host interaction phenotype curation
- Sept 2012 – Dec 2016
Scientific Officer (part time) Gemmell Group
Department of Anatomy, University of Otago
- Tasks
- bioinformatics support
- genome and transcriptome assembly and analysis
- bioinformatics mentoring and training
- tuatara genome project
- Feb 2009 – June 2010
Computer Associate Baulcombe Group
Department of Plant Sciences, University of Cambridge
- Tasks
- bioinformatics support
- creation of a short read analysis pipeline
- Sept 2007 – Feb 2009
Programmer modENCODE Data Coordination Center
Cambridge Systems Biology Centre
- Tasks
- helped create the data warehouse for the modENCODE project:
modMine
- Feb 2004 – Sept 2007
Programmer FlyMine/InterMine group
Department of Genetics, University of Cambridge
- Tasks
- Java programming for the InterMine project
- Oct 2001 – Feb 2004
Principal Computer Programmer Pathogen Sequencing Unit
The Sanger Institute
- Tasks
- programming and bioinformatics support
- Major projects
- Artemis - a genome analysis and annotation tool
- ACT - a genome comparison viewer
- Apr 1999 – Oct 2001
- Senior Computer Programmer Pathogen Sequencing Unit
The Sanger Institute
- Sept 1998 – Apr 1999
- Computer Programmer Pathogen Sequencing Unit
The Sanger Institute